Weatherbee SD,  Carroll SB.  Selector genes and limb identity in arthropods and vertebrates.  Cell 1999; 97:283-286.

Carroll SB, Grenier JK, Weatherbee SD.  DNA to Diversity:  Molecular genetics and the evolution of animal design  Malden, MA: Blackwell Scientific (2001) & (2005).

Weatherbee SD, Niswander LA.  Mechanisms of Chondrogenesis and Osteogenesis in Limbs, in Fins into Limbs: Evolution, Development, and Transformation.  The University of Chicago Press, 2006.

Cretekos CJ, Weatherbee SD, Chen CH, Badwaik NK, Niswander LA, Behringer RR, and RasweilerIV JJ.  Embryonic staging system for the short-tailed fruit bad Carollia perspicillata, a model organism for the mammalian order Chiroptera, based upon timed pregnancies in captive-bred animals.  Developmental Dynamics 2005; 233:721-738

Weatherbee SD,  Behringer RR, Rasweiler IV JJ and Niswander LA. Interdigital webbing retention in bat wings illustrates genetic changes underlying amniote limb diversification.  PNAS 2006; 103:15103-15107.

Weatherbee SD, Anderson KV and Niswander LA. Ldl-receptor-related protein 4 is crucial for formation of the neuromuscular junction. Development 2006; 133:4993-5000.

Weatherbee SD.  Mammalian limbs take flight.  Developmental Cell 2008; 14(2):149-150.

Weatherbee, S.D., Niswander, L.A., and Anderson, K.V. A mouse model for Meckel Syndrome reveals Mks1 is required for ciliogenesis and Hedgehog signaling. Human Molecular Genetics 2009; 18:4565-4575

Lee S, Weatherbee SD.  Synergistic interaction between ciliary genes reflects the importance of mutational load in ciliopathies.  2010; JASN, 21(5):724-6.

Pluznick JL, Rodriguez-Gil DJ, Hull M, Mistry K, Gattone V, Johnson CA, Weatherbee S, Greer CA, Caplan MJ.  Renal cystic disease proteins play critical roles in the organization of the olfactory epithelium. PLoS One 2011 6(5): e19694.

Christopher KJ, Wang B, Kong Y, Weatherbee SD. Forward genetics uncovers Transmembrane protein 107 as a novel factor required for ciliogenesis and Sonic Hedgehog signaling.  Developmental Biology 2012; 368(2):382-92.

Ahn Y, Sims D, Logue JM, Weatherbee SD, Krumlauf R. Interplay between Lrp4 and Wise controls formation and patterning of placodes for mammary glands and other skin appendages by modulating Wnt signaling.  Development 2013; 140(3):583-93.

Lee S, Kong, Y., Weatherbee S.D. Forward genetics identifies Kdf1/1810019J16Rik as an essential regulator of the proliferation-differentiation decision in epidermal progenitor cells. Developmental Biology, 2013; 383(2): 201-13.

Mis, E.K, Liem Jr., K.F., Kong, Y., Schwartz, N., Domowicz, M., Weatherbee S.D. Forward Genetics Defines Xylt1 as a Key, Conserved Regulator of Early Chondrocyte Maturation and Skeletal Length. Developmental Biology, 2014; 385(1): 67-82.