Curriculum vitae

Frank Slack

Associate Professor
Department of Molecular, Cellular and Developmental Biology
Yale University

Mailing Address:
Department of Molecular, Cellular and Developmental Biology,
Yale University, KBT 716
PO Box 208103, 266 Whitney Ave
New Haven, CT 06520.
Phone (203) 432 3492; Fax (203) 432 6161;
e-mail: frank.slack@yale.edu

Citizenship: USA

Education:

Research experience:

1987: B. Sc. (Honours) Thesis in the laboratory of Dr. Frank Robb, Department of Microbiology, University of Cape Town. "Mutagenic analysis of the Vibrio alginolyticus glnA gene promoter, and sequencing of these mutations".

1993: Ph.D. Thesis in the laboratory of Dr. Linc Sonenshein, Department of Molecular Biology and Microbiology, Tufts University School of Medicine. "Function and regulation of dciA, the Bacillus subtilis dipeptide transport operon".

1993-1994: Postdoctoral research in the laboratory of Dr. Dale Kaiser, Department of Biochemistry, Stanford University School of Medicine. Signal transduction by C-factor during development of Myxococcus xanthus.

1994-1999: Postdoctoral research in the laboratory of Dr. Gary Ruvkun. Department of Genetics, Harvard Medical School, and Department of Molecular Biology, Massachusetts General Hospital. Temporal pattern formation by heterochronic genes in C. elegans.

2000- 2005: Assistant Professor, Department of MCDB, Yale University. Developmental timing by microRNAs and heterochronic genes.

2005- present: Associate Professor, Department of MCDB, Yale University. Developmental timing by microRNAs and heterochronic genes.

2007- present: Associate Professor with tenure, Department of MCDB, Yale University. MicroRNAs in development and disease.

Research Interests:

The role of microRNAs and their targets in development and disease.

Honors, fellowships and service:

  • Invited lectures

  • Scheduled

  • Scientific organizations:

    Publications:

    Mueller, J. P., C. Mathiopoulos, F. J. Slack, and A. L. Sonenshein. (1991) Identification of Bacillus subtilis adaptive response genes by subtractive differential hybridization. Res. in Microbiol. (Inst. Pasteur), 142: 805-813

    Mathiopoulos, C., J. P. Mueller, F. J. Slack, C. G. Murphy, S. Patankar, G. Bukusoglu, and A. L. Sonenshein. (1991) A Bacillus subtilis dipeptide transport system expressed early during sporulation. Mol. Microbiol. 5: 1903-1913

    Slack, F. J., J. P. Mueller, M. A. Strauch, C. Mathiopoulos, and A. L. Sonenshein. (1991) Transcriptional regulation of a Bacillus subtilis dipeptide transport operon. Mol. Microbiol. 5: 1915-1925

    Slack, F. J., J. P. Mueller, and A. L. Sonenshein. (1993) Mutations that relieve nutritional repression of the Bacillus subtilis dipeptide permease operon. J. Bacteriol. 175:4605-4614

    Slack, F. J., P. Serror, E. Joyce, and A. L. Sonenshein. (1995) A gene involved in nutritional repression of the Bacillus subtilis dipeptide permease operon. Mol. Microbiol. 15:689-702

    Sogaard-Andersen* L., F. J. Slack,*, H. Kimsey, and D. Kaiser. (1996) Intercellular C-signaling in Myxococcus xanthus involves a branched signal transduction pathway. Genes Dev. 10:740-754
    * contributed equally

    Slack, F. J. and G. Ruvkun. (1997) Temporal pattern formation by heterochronic genes. Annu. Rev. Genet. 31:611-634.

    Slack, F. J. and G. Ruvkun. (1998) A novel repeat domain that is often associated with RING finger and B box motifs. Trends Biochem. Sci. 23:474-475.

    Slack, F. J. and G. Ruvkun. (1998) Heterochronic genes in development and evolution. Biol. Bulletin. 195:375-376.

    Miyabayashi, T., M. T. Palfreyman, A. Sluder, F. J. Slack, and P. Sengupta. (1999) Members of a divergent nuclear hormone receptor family are expressed in multiple cell types in C. elegans. Dev Biol. 15:314-331

    Slack, F. J., M. Basson, Z. Liu, V. Ambros, R. Horvitz and G. Ruvkun. (2000) The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor. Molecular Cell 5:659-669

    Reinhart, B.*, Slack, F. J.*, M. Basson, A. Pasquinelli, J. Bettinger, A. Rougvie, R. Horvitz, and G. Ruvkun. (2000) The 21 nucleotide let-7 RNA regulates C. elegans developmental timing. Nature 403:901-905
    *Contributed equally

    Pasquinelli, A. B. Reinhart, F. Slack, ..... and G. Ruvkun. (2000) Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature 408:86-89.

    Banerjee, D. and F. J. Slack. (2002) Control of developmental timing by small temporal RNAs: a paradigm for RNA mediated regulation of gene expression. Bioessays 24:119-129.

    Grosshans, H. and F. J. Slack. (2002) Micro-RNAs: small is plentiful. J. Cell Biol. 156:17-21.

    Ramaswamy, G. and F. J. Slack. (2002) siRNAs: a guide to silencing. Chem Biol. 9:1053-1057.

    Lin S.-Y., S. Johnson, M. Abraham, M. Vella, A. Pasquinelli, C. Gamberi, E. Gottlieb, and F. J. Slack. (2003) The C. elegans hunchback homologue, hbl-1, controls temporal patterning and is a probable microRNA target. Dev. Cell. 4:639-650

    Johnson, S., S.-Y. Jin, and F. J. Slack. (2003) Temporal up-regulation of the C. elegans let-7 microRNA is transcriptionally controlled utilizing a temporal regulatory element in the let-7 promoter. Dev Biol.259:364-379

    Vella M. C., E.-Y. Choi, S.-Y. Lin, K. Reinert, and F. J. Slack. (2004) The C. elegans microRNA let-7 binds to imperfect complementary sites from the lin-41 3’UTR. Genes Dev. 18:132-137.

    Ramaswamy, G. and F. J. Slack (2004) The silent revolution. Review on the Book RNAi: A Guide to Gene Silencing edited by Gregory Hannon. Nature Cell Biol. 6:277.

    Esquela-Kerscher, A. and F. J. Slack. (2004) The age of high-throughput microRNA profiling. Nature Methods. 1:106-107.

    Vella, M.C., K. Reinert and F. J. Slack. (2004) Architecture of a validated microRNA::target interaction. Chem. Biol. 11:1619-1623.

    Banerjee, D., A. Kwok, S.-Y. Lin, and F. J. Slack. (2005) Developmental timing in C. elegans is regulated by kin-20 and tim-1, homologs of core circadian clock genes. Dev. Cell. 8:287-295.

    Banerjee, D. and F. J. Slack. Temporal and spatial patterning of an organ by a single transcription factor. Genome Biol. 6:205-208.

    Grosshans, H, T. Johnson, M. K. Reinert, Gerstein and F. J. Slack. (2005) The temporal patterning microRNA let-7 controls several transcription factors during the larval to adult transition in C. elegans. Dev. Cell. 8:321-330.

    Johnson, S., H. Grosshans, J. Shingar, M. Byrom, R. Jarvis, A. Cheng, E. Labourier, K. L. Reinert, D. Brown, and F. J. Slack. (2005) RAS is regulated by the let-7 microRNA family. Cell. 120:635-647.

    Vella, M and F. J. Slack. (2005) C. elegans microRNAs. WormBook, ed. The C. elegans Research Community, WormBook,doi/10.1895/wormbook.1.26.1, http://www.wormbook.org.

    Esquela-Kerscher, A., S. M. Johnson, L. Bai, K. Saito, J. Partridge, K. Reinert and F. J. Slack. (2005) Post-embryonic expression of C. elegans microRNAs belonging to the lin-4 and let-7 families in the hypodermis and reproductive system. Dev. Dyn. 234:868-877.

    Schulman, B., A. Esquela-Kerscher, and F. J. Slack. (2005) Reciprocal expression of lin-41 and the microRNAs let-7 and mir-125 during mouse embryogenesis. Dev. Dyn. 234:1046-1054.

    Boehm, M., and F. J. Slack. (2005). A developmental timing microRNA and its target regulate life span in C. elegans. Science. 310:1954-1957.

    Slack, F. J. and J. B. Weidhaas. (2006) MicroRNAs as a potential magic bullet in cancer. Future Oncology. 2:73-82.

    Esquela-Kerscher, A. and F. J. Slack. (2006) Oncomirs - microRNAs with a role in cancer. Nature Reviews Cancer. 6:259-269. (Featured and cover article)

    Boehm, M. and F. J. Slack. (2006) microRNA control of lifespan and metabolism. Cell Cycle. Vol: 5 Issue: 8 16 April 2006 pp e1-e4.

    Roush, S. and F. J. Slack. (2006) Micromanagement: microRNAs stabilize mRNAs. ACS Chem. Biol. 1 (3), 132-134

    Chan, S-P and F. J. Slack. (2006) miRNAs and P-bodies. RNA Biol. 3:97-100.

    Stefani, G and F. J. Slack. (2006) MicroRNAs in search of targets. Invited review for CSHL Quantitative Symposium. Available online.

    F. J. Slack. Regulatory RNAs and the demise of 'junk' DNA. Meeting report of 71st CSHL Symposium on Quantitative Biology “Regulatory RNAs”. Genome Biol. 2006 Sep 28;7(9):328

    Niwa, R. and F. J. Slack. (2007) Ins and outs of RNAi analysis. Invited review for Molec. Cell. In press.

    Nolde, M., N. Saka, K. Reinert and F. J. Slack. (2007) The C. elegans Pumilio homologue, PUF-9 is required for 3' UTR mediated regulation of the let-7 microRNA target, hbl-1. Dev. Biol. Mar 3 Epub ahead of print.

    Niwa, R. and F. J. Slack. (2007) Evolution of microRNA function. Curr Opin Genet Dev. 17:145-50. Epub 2007 Feb 20.

    Babar, I., and F.J. Slack. (2007) MicroRNAs in Cancer. Am. Soc. Clin. Oncol. Ed Book. p716-719

    Mona Nolde and F. J. Slack. MicroRNAs in C. elegans. In Regulation of Gene Expression by Small RNAs (CRC Press). In press.

    Stahlhut, C., and F. J. Slack. MicroRNAs in cancer. Invited review for Yale Journal of Biology and Medicine. In press.

    Johnson, C., Esquela-Kerscher, A., Stefani, G., Byrom, M., Kelnar, K., Ovcharenko, D., Wilson, M., Wang, X., Shelton, J., Shingara, J., Brown, D., and F.J. Slack. (2007) The let-7 microRNA represses cell proliferation pathways in human cells. Cancer Res. 67:7713-7722.

    Weidhaas, J., I. Babar, S. Naller, S. Roush, M. Boehm, and F. J. Slack. (2007) MicroRNAs as Potential Agents to Alter Resistance to Cytotoxic anti-Cancer Therapy. Cancer Res. 67:11111-11116.

    Kato, M. and F. J. Slack. (2007) microRNAs: small molecules with a big role in biology and disease. Invited review for Biology of the Cell. 100:71-81.

    Chan, S-P., and F. J. Slack. (2007) And now introducing mammalian mirtrons. Dev. Cell. 13:605-607.

    Chin, L. and F. J. Slack. (2007) MicroRNA mediated regulation of gene expression. Chapter 6 of “RNA and the Regulation of Gene Expression: A Hidden Layer of Complexity” (Horizon Scientific Press). In press.

    Babar, I A., F. J. Slack, J. B. Weidhaas (2008). MicroRNA modulation of the cellular stress response. Future Oncology. 4:289-298.

    Niwa, R. F. Zhou, C. Li and F. J. Slack. (2008) C. elegans Alzheimer APP-like is regulated by developmental timing microRNAs and their targets. Dev Biol. Jan 8; [Epub ahead of print]

    Esquela-Kerscher, A., P. Trang, Cheng, A., Ford, L., Weidhaas, J, Brown, D. Bader, A, and F. J. Slack. (2008) The let-7 microRNA reduces tumor growth in mouse models of lung cancer. Cell Cycle. 7:759-64

    Stefani, G. and F. J. Slack. (2008) The role of small RNAs in animal development. Invited review for Nature Reviews Molecular Cell Biology. 9:219-30.

    A. Esquela-Kerscher, J. Weidhaas, and F. J. Slack. (2008) MicroRNA detection and profiling. Invited review for Methods in Molecular Biology by Humana Press, USA. In press.

    Chan, S-P., G.Ramaswamy, E.-Y.Choi, and F. J. Slack. (2008) Identification of specific let-7 microRNA binding complexes in Caenorhabditis elegans. RNA. Aug 21. [Epub ahead of print].

    Ding, X., F. J. Slack* and H. Grosshans*. (2008) The let-7 microRNA interfaces extensively with the translation machinery to regulate cell differentiation. Cell Cycle. 7:3083-3090. *joint corresponding author

    Lena J. Chin, L.J., S. Nallur, Y. Zhu, S. Leng, E. A. Burki, R. E. Crowell, E. Straka, E. Ratner, S. A. Belinsky, K. K. Kidd, R. Homer, F. J. Slack* and J. B. Weidhaas*. (2008) A SNP in a let-7 microRNA complementary site in the KRAS 3¢UTR Increases Lung Cancer Risk. Can. Res. In press. *joint corresponding author

    Godshalk, S., G. Miller and F. J. Slack. De novo infection of human primary B-cells by the Epstein-Barr virus deregulates multiple oncogenic and tumor-suppressive microRNAs. Cell Cycle. In press.

    Babar, I A., F. J. Slack, J. B. Weidhaas. (2008) MicroRNA modulation of the cellular stress response. Future Oncology. 4:289-298.

    Ratner, E., A. Esquela-Kerscher, J. Weidhaas, and F. J. Slack. (2008) MicroRNA detection and profiling. Invited review for Methods in Molecular Biology by Humana Press, USA. In press.

    Büssing I., F. J. Slack and H. Grosshans. (2008) “The role of the let-7 microRNA family: implications for human disease. Trends Mol Med. 4:400-409. Epub 2008 Jul 31.

    Medina, P. and F. J. Slack. (2008) MicroRNAs and cancer, an overview. Cell Cycle. Aug17;7(16). [Epub ahead of print]

    Roush, S. and F. J. Slack. (2008) The let-7 family of microRNAs. Trends Cell Biol. Sep 4. [Epub ahead of print].

    Chin, L and F. J. Slack. (2008) Truth serum for cancer: microRNAs show potential as biomarkers of cancer. Cell Science. 18:983–984.

    Pincus, Z., and F. J. Slack. Transcriptional (Dys)regulation and Aging in C. elegans. Genome Res. 9:233.

    Prepared and copyrighted (2000) by Frank Slack
    Please send queries to frank.slack@yale.edu.

    Last modified on Oct 27th 2008

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