Yale University Links • Journals & Databases • Open Access Journals
Biomolecular Tools • Seminars & Calendars • Vendors • Software
Organizations & Conferences • Synchrotron Light Sources

Regan Lab Intranet password required

Yale University Links

Yale University
Yale Medical School
Department of Molecular Biophysics & Biochemistry
Department of Chemistry
MB&B Center for Structural Biology
W.M. Keck Facility sequencing, oligos, microarrays, AA analysis, MS, peptide synthesis
Yale Libraries (Kushing/Whitney Medical Library / At-Home Access / VPN)
Yale Wireless Network (VPN)
Yale Phonebook
Yale eportal CDWG, Dell, Apple, lab supplies, office supplies, travel
Yale EH&S (Safety Training) online chemical and bloodborne pathogens training
Yale NMR Booking Page local access only
transfer.med.yale.edu for sending large files to/from Yale

The library Proxy Server, eportal, OVID and other resources require a Yale netid & password
Yale NetID how to find your netid, get a netid password and activate your netid

Journals & Databases (Some require password or institutional access)

BioMedNet requires free registration
ChemWeb.com requires free registration
Current Protocols
Faculty of 1000 community selected list of biology papers
OVID Medline, Current Contents, etc.
Orbis Yale library catalog online
PubMed at NCBI
The-Scientist.com news journal for life sciences
Web of Science

Merriam-Webster Dictonary Online
Oxford English Dictionary (OED) Online
Encyclopædia Britannica Online

ACS publications • ACS Chemical Biology • Accounts of Chemical Research •
Amyloid • Angewandte Chemie International Edition • Annual Review of Biochemistry
Annual Review of Biophysics & Biomolecular Structure
Biochimica et Biophysica Acta • Biochemical & Biophysical Research Comm
Biochemistry • Biophysical Chemistry • Biophysical Journal
Cell • Cellular & Molecular Life Sci • Chemical Reviews • Cell Stress & chaperones • Chemistry & Biology• Current Biology • Current Opinion in Biotechnology
Current Opinion in Chemical Biology • Current Opinion in Structural Biology
EMBO Journal • European Journal of Biochemistry • FEBS Letters
Gene • Journal of the American Chemical Society
Journal of Biological Chemistry • Journal of Biomolecular NMR
Journal of Molecular Biology • Journal of Organic Chemistry
Journal of Physical Chemistry B • Methods
Molecular and Cellular Biology •
Molecular Cell • Nature • Nature Biotechnology
Nature Chemical Biology • Nature Structural & Molecular Biology
Nature Reviews Cancer • Nucleic Acids Research • Proc Natl Acad Sci USA
Protein Engineering, Design & Selection (PEDS) • Protein Science
Proteins • Quarterly Rev Biophysics • RNA • Science • Structure
Trends in Biochemical Sciences

Open Access Journals

BioMed Central (Journal of Biology / BMC Biology / BMC Biochemistry / BMC Structural Biology / BMC Chemical Biology / BMC Biotechnology)
Public Library of Science (PLoS Biology / PLoS Medicine)

Biomolecular Tools and Databases on the Web

BCM Search Launcher protein and DNA searches, sequence alignment, utilities
BMRB biomecular chemical shifts database at U. Wisc. Madison
Buffer Maker
ChemFinder.com structures and properties of compounds
Entelechon Bioinformatics Tools (reverse translation tool)
ExPASy Molecular Biology Server (ProtParam tool protein mw, pI, etc.)
Invitrogen RNAi Designer
K2d program estimation of the percentages of protein 2nd structure from far UV CD spectra
Kyoto Encyclopedia of Genes & Genomes (E. coli codon usage)
MolBiol.Net links to molecular biology tools on the web
NCBI Homepage (BLAST) (BLAST human genome) sequence identification
Online Analysis Tools DNA & protein sequence analysis
Pedro's Biomolecular Research Tools
Pfam protein domains and hidden Markov models
Protein Data Bank
Schepartz Lab Biopolymer Calculator
Sorvall Rotor Calculator
Stratagene Laboratory Tools PCR and QuikChange design, sequence & lab utils.
Structural Classification of Proteins (SCOP)
WebElements online periodic table of the elements

Seminars & Calendars

Yale MB&B Seminar Schedule
CSB Seminar Schedule
Yale Medical School Comprehesive Seminar Calendar
Yale Chemistry Seminar Schedule

Vendors

Agilent • Antibody Resource Page • Amersham Biosciences • Bachem • Biacore
BioRad • BD Biosciences (Clontech) • Cambridge Isotope Labs • EMD Biosciences
Fisher • Hampton Research • Invitrogen (Gibco BRL) • Molecular Probes • NEB
Newegg.com • Operon at Qiagen • PerkinElmer (NEN) • Promega • Pierce • Qiagen
Roche • Shigemi NMR Tubes •Sigma-Aldrich-Fluka • Spectra Stable Isotopes
Stratagene • VWR

PC Software for Science (Windows)

Boxshade coloring of multiple sequence alignment files
CDPro analysis of protein CD spectra
Chime rendering molecules in IE/Netscape; necessary for Protein Explorer
Chromas DNA sequencing chromatogram viewer for PCs
ClustalX THE multiple sequence alignment program
Cn3D viewer for NCBI Entrez system
Genedoc multiple sequence alignment formatting and analysis
InsightII Reference Manual requires password
MegaPOV extension to POV-Ray (MegaPOV 0.7 for POV-Ray 3.1g)
Molmol molecular visualization, especially good for POV-Ray output
NJPlot tree-drawing software
OligoTech from Oligos, etc. oligo analysis package for PCs
PAWS protein/peptide mass spec tool
pDRAW32 DNA Strider-like DNA sequence analysis/plotting freeware for PCs
POV-Ray ray tracer for 3D graphics
PyMOL molecular viewer and ray tracer
RasMol 2.6b2 last official release of the molecular viewer
RasMol 2.7 Herbert Bernstein's upgrades of RasMol 2.6
Protein Explorer successor to Rasmol; works with IE and Netscape; requires Chime
Swiss PDB Viewer (Deep View) InsightII-like molecular visualization tool
Treeview tree-drawing software
Yale ITS-Med Norton Antivirus, SSH, WS_FTP, etc.--for Yale use only

Organizations & Conferences

American Association for the Advancement of Science (AAAS / Science)
American Chemical Society (ACS / C&E News / Journals)
Biophysical Society (Biophysical Journal)
FRAXA Research Foundation Fragile X research
Gordon Conferences Homepage
Howard Hughes Medical Institute
National Academy of Sciences (PNAS)
National Institutes of Health
National Science Foundation
Protein Society (Protein Science)
Sigma Xi (American Scientist)

Synchrotron Light Sources

Argonne National Laboratory (APS)
Brookhaven National Laboratory (NSLS)
Cornell High Energy Synchrotron Source (CHESS)