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by "Deng XW"
Supplementary data for our genomics
publications could be found
in the Yale Plant Genomics Group.
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: Full Text Available
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Liu C, Guo LQ, Menon S, Jin D, Pick E, Wang XJ, Deng XW, Wei N.
COP9 signalosome subunit Csn8 is involved in maintaining proper duration of the G1 phase.
J Biol Chem Published online: 2013 May 20
·
He G, He H, Deng XW.
Epigenetic Variations in Plant Hybrids and Their Potential Roles in Heterosis.
J GENET GENOMICS Published online: 2013 May 20
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Li B, Duan H, Li J, Deng XW, Yin W, Xia X.
Global identification of miRNAs and targets in Populus euphratica under salt stress.
Plant Mol Biol Published online: 2013 Feb 22
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Wang J, Yu Y, Zhang Z, Quan R, Zhang H, Ma L, Deng XW, Huang R.
Arabidopsis CSN5B Interacts with VTC1 and Modulates Ascorbic Acid Synthesis.
Plant Cell Published online: 2013 Feb 19
·
Dai M, Xue Q, McCray T, Margavage K, Chen F, Lee JH, Nezames CD, Guo L, Terzaghi W, Wan J, Deng XW, Wang H.
The PP6 Phosphatase Regulates ABI5 Phosphorylation and Abscisic Acid Signaling in Arabidopsis.
Plant Cell Published online: 2013 Feb 12
·
Guo L, Nezames CD, Sheng L, Deng X, Wei N.
Cullin-RING Ubiquitin Ligase Family in Plant Abiotic Stress Pathways(F).
J Integr Plant Biol Published online: 2013 Jan 30
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Zhou H, Zhao J, Yang Y, Chen C, Liu Y, Jin X, Chen L, Li X, Deng XW, Schumaker KS, Guo Y.
Plant Cell Published online: 2012 Dec 11
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Huang X, Ouyang X, Yang P, Lau OS, Li G, Li J, Chen H, Deng XW.
Plant Cell Published online: 2012 Nov 13
·
Liu TT, Zhu D, Chen W, Deng W, He H, He G, Bai B, Qi Y, Chen R, Deng XW.
Mol Plant Published online: 2012 Sep 17
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Pick E, Golan A, Zimbler JZ, Guo L, Sharaby Y, Tsuge T, Hofmann K, Wei N.
The minimal deneddylase core of the COP9 signalosome excludes the Csn6 MPN- domain.
PLoS One Published online: 2012 Aug 30
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Zhao J, Huang X, Ouyang X, Chen W, Du A, Zhu L, Wang S, Deng XW, Li S.
PLoS One Published online: 2012 Aug 17
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Zhong S, Shi H, Xue C, Wang L, Xi Y, Li J, Quail PH, Deng XW, Guo H.
A Molecular Framework of Light-Controlled Phytohormone Action in Arabidopsis.
Curr Biol Published online: 2012 Jul 20
Comment
Comment by F1000
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Chen H, Chen W, Zhou J, He H, Chen L, Chen H, Deng XW.
Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice.
Plant Sci Published online: 2012 May 17
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Fan D, Dai Y, Wang X, Wang Z, He H, Yang H, Cao Y, Deng XW, Ma L.
Nucleic Acids Res Published online: 2012 Jul 5
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Dai M, Zhang C, Kania U, Chen F, Xue Q, Mccray T, Li G, Qin G, Wakeley M, Terzaghi W, Wan J, Zhao Y, Xu J, Friml J, Deng XW, Wang H.
Plant Cell Published online: 2012 Jun 19
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Nezames CD, Deng XW.
Plant Physiol Published online: 2012 Jun 19
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Lau OS, Deng XW.
The photomorphogenic repressors COP1 and DET1: 20 years later.
Trends Plant Sci Published online: 2012 Jun 15
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Chen F, Shi X, Chen L, Dai M, Zhou Z, Shen Y, Li J, Li G, Wei N, Deng XW.
Plant Cell Published online: 2012 May 11
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Yang DL, Yao J, Mei CS, Tong XH, Zeng LJ, Li Q, Xiao LT, Sun TP, Li J, Deng XW, Lee CM, Thomashow MF, Yang Y, He Z, He SY.
Proc Natl Acad Sci U S A Published online: 2012 Apr 23
·
Wu D, Hu Q, Yan Z, Chen W, Yan C, Huang X, Zhang J, Yang P, Deng H, Wang J, Deng XW, Shi Y.
Structural basis of ultraviolet-B perception by UVR8.
Nature Published online: 2012 Feb 29
·
Li J, Terzaghi W, Deng XW.
Genomic basis for light control of plant development.
Protein Cell 2012 3:106-116.
·
Zhu D, Deng XW.
A non-coding RNA locus mediates environment-conditioned male sterility in rice.
Cell Res Published online: 2012 Mar 20
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Shen H, He H, Li J, Chen W, Wang X, Guo L, Peng Z, He G, Zhong S, Qi Y, Terzaghi W, Deng XW.
Plant Cell Published online: 2012 Mar 20. ·
Li W, Zang B, Liu C, Lu L, Wei N, Cao K, Deng XW, Wang X. J Genet Genomics 2011 38:539-546. ·
Cui H, Hao Y, Kovtun M, Stolc V, Deng XW, Sakakibara H, Kojima M. Plant Physiol 2011 157:1221-31. ·
Lau OS, Huang X, Charron JB, Lee JH, Li G, Deng XW. Mol Cell 2011 43: 703-712. Published online: 2011 Sep 1. ·
Li J, Li G, Wang H, Deng XW. Phytochrome Signaling Mechanisms.
The Arabidopsis Book 9: e148. Published online: 2011 Aug 22. ·
Ouyang X, Li J, Li G, Li B, Chen B, Shen H, Huang X, Mo X, Wan X, Lin R, Li S, Wang H, Deng XW. Plant Cell 2011 23:2514-2535. Published online: 2011 Jul 29. ·
Wang F, Deng XW. Plant ubiquitin-proteasome pathway and its role in gibberellin signaling.
Cell Res 2011 21:1286-1294. Published online: 2011 Jul 26. ·
Li HW, Zang BS, Deng XW, Wang XP. Planta 2011 234:1007-1018. Published online: 2011 Jun 24. ·
Chen H, He H, Zou Y, Chen W, Yu R, Liu X, Yang Y, Gao YM, Xu JL, Fan LM, Li Y, Li ZK, Deng XW. Theor Appl Genet 2011 123:869-879. Published online: 2011 Jun 18. ·
Tsuge T, Menon S, Tong Y, Wei N. CSN1 inhibits c-Jun phosphorylation and down-regulates ectopic expression of JNK1.
Protein Cell 2011 2:423-432. Published online: 2011 May 21. ·
Zang B, Li H, Li W, Deng XW, Wang X. Plant Mol Biol. 2011 76:507-522. Published online: 2011 May 20. ·
Li G, Siddiqui H, Teng Y, Lin R, Wan XY, Li J, Lau OS, Ouyang X, Dai M, Wan J, Devlin PF, Deng XW, Wang H. Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis.
Nat Cell Biol 2011 13:616-622. Published online: 2011 Apr 17. ·
Lozano-Duran R, Rosas-Diaz T, Gusmaroli G, Luna AP, Taconnat L, Deng XW, Bejarano ER. Plant Cell 2011 23:1014-1032. Published online: 2011 Mar 25. ·
He G, Elling AA, Deng XW. The Epigenome and Plant Development. Annu Rev Plant Biol 2011 Jun;62:411-35. Published online: 2011 May 18. ·
Lee JH, Terzaghi W, Deng XW. DWA3, an Arabidopsis DWD protein, acts as a negative regulator in ABA signal transduction Plant Sci 2011 180:352-357. Published online: Oct 21, 2010. ·
Zhang H, He H, Wang X, Wang X, Yang X, Li L and Deng XW. Plant J 2011 65:346-58. Published online: Nov 13, 2010. ·
Li J, Li G, Gao S, Martinez C, He G, Zhou Z, Huang X, Lee JH, Zhang H, Shen Y, Wang H and Deng XW. Plant Cell 2010 22:3634-3649. Published online: Nov 19, 2010. ·
Chen F, He G, He H, Chen W, Zhu X, Liang M, Chen L, Deng XW. J Integr Plant Biol 2010 52:971-980. Published online: Jul 15, 2010. ·
Lau OS and Deng XW. Plant hormone signaling lightens up: integrators of light and hormones Curr Opin Plant Biol 2010 13:571-577. Published online: Aug 23, 2010. ·
He H, Zhang H, Wang X, Wu N, Yang X, Chen R, Li Y, Deng XW and Li L. Genomics 2010 96:308-315. Published online: Aug 3, 2010. ·
Lee JH, Yoon HY, Terzaghi W, Martinez C, Dai M, Li J, Byun MO and Deng XW. Plant Cell 2010 22: 1716-1732. Published online: June 4, 2010. ·
Yang Y, Qin Y, Xie C, Zhao F, Zhao J, Liu D, Chen S, Fuglsang AT, Palmgren MG, Schumaker KS, Deng XW and Guo Y. Plant Cell 2010 22:1313-1332. Published online April 23, 2010. ·
Bai S, Zhao J, Zhang Y, Huang W, Xu S, Chen H, Fan LM, Chen Y and Deng XW Rapid and reliable detection of 11 food-borne pathogens using thin-film biosensor chips Appl Microbiol Biotechnol. 2010 86:983-990. Published online: January 21, 2010. ·
He G, Zhu X, Elling AA, Chen L, Wang X, Guo L, Liang M, He H, Zhang H, Chen F, Qi Y, Chen R and Deng XW. Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids Plant Cell 2010 22:17-33. Published online: January 19, 2010. ·
Chen H, Huang X, Gusmaroli G, Terzaghi W, Lau OS, Yanagawa Y, Zhang Y, Li J, Lee JH, Zhu D and Deng XW. Plant Cell 2010 22:108-123. Published online: January 8, 2010. ·
Zhou J, Wang X, He K, Charron JB, Elling AA and Deng XW. Plant Mol Biol 2010 72:585-595. Published online: January 7, 2010. ·
Charron JB, He H, Elling AA and Deng XW. Dynamic Landscapes of Four Histone Modifications during Deetiolation in Arabidopsis Plant Cell 2009 21:3732-3748. Published online: December 11, 2009. ·
Xie CG, Lin H, Deng XW and Guo Y. Roles of SCaBP8 in salt stress response Plant Signal Behav 2009 4(10):956-8. Epub 2009 Oct 17. ·
Elling AA and Deng XW. Plant Signal Behav 2009 4(8):760-2. Epub 2009 Aug 3 ·
Wang F, Zhu D, Huang X, Li S, Gong Y, Yao Q, Fu X, Fan LM and Deng XW. Plant Cell 2009 21: 2378-2390. Published online: August 28, 2009. ·
He K, Li X, Zhou J, Deng XW, Zhao H and Luo J. NTAP: for NimbleGen tiling array ChIP-chip data analysis Bioinformatics 2009 25:1838-40. Epub 2009 May 25. ·
Wang X, Elling AA, Li X, Li N, Peng Z, He G, Sun H, Qi Y, Liu XS, and Deng XW. Plant Cell 2009 21:1053-69. [Epub ahead of print] ·
Wang X, Yu Z, Yang X, Deng XW and Li L. Bioinformatics 2009 Mar 16. [Epub ahead of print] ·
Shen Y, Zhou Z, Feng S, Li J, Tan-Wilson A, Qu LJ, Wang H and Deng XW. Plant Cell 2009 Feb 10. [Epub ahead of print] ·
Wang X, Li W, Piqueras R, Cao K, Deng XW and Wei N. Regulation of COP1 nuclear localization by the COP9 Signalosome via direct interaction with CSN1. Plant J. 2009 Jan 28. [Epub ahead of print] ·
Wei N. On the Structural Model of the COP9 Signalosome. Structure. 2009 Jan;17(1):1-2. ·
Jiao Y, Lori Tausta S, Gandotra N, Sun N, Liu T, Clay NK, Ceserani T, Chen M, Ma L, Holford M, Zhang HY, Zhao H, Deng XW and Nelson T. Nat Genet. 2009 Jan 4. [Epub ahead of print]. ·
Yu JW, Rubio V, Lee NY, Bai S, Lee SY, Kim SS, Liu L, Zhang Y, Irigoyen ML, Sullivan JA, Zhang Y, Lee I, Xie Q, Paek NC and Deng XW. COP1 and ELF3 Control Circadian Function and Photoperiodic Flowering by Regulating GI Stability. Mol Cell 2008 32:617-630, 5 December 2008. ·
Lau OS and Deng XW. Biochem J 2008 Dec 5. [Epub ahead of print]. ·
Peng ZY, Zhang H, Liu T, Dzikiewicz KM, Li S, Wang X, Hu G, Zhu Z, Wei X, Zhu QH, Sun Z, Ge S, Ma L, Li L and Deng XW. Characterization of the genome expression trends in the heading-stage panicle of six rice lineages. Genomics 2008 Nov 24. [Epub ahead of print] ·
Wei N, Serino G and Deng XW. The COP9 signalosome: more than a protease. Trends Biochem Sci. 2008 Oct 14. [Epub ahead of print] ·
Zhang Y, Xu W, Li Z, Deng XW, Wu W and Xue Y. Plant Physiol. 2008 Oct 3. [Epub ahead of print] ·
Zhu D, Maier A, Lee JH, Laubinger S, Saijo Y, Wang H, Qu LJ, Hoecker and Deng XW. Plant Cell 2008 Sep 23. [Epub ahead of print] ·
Yin BL, Guo L, Zhang DF, Terzaghi W, Wang XF, Liu TT, He H, Cheng ZK and Deng XW. Integration of Cytological Features with Molecular and Epigenetic Properties of Rice Chromosome 4. Mol Plant 2008 1: 816-829; doi:10.1093/mp/ssn037. Advance Access published on August 8, 2008. ·
Zhang HY, He H, Chen LB, Li L, Liang MZ, Wang XF, Liu XG, He GM, Chen RS, Ma LG, and Deng XW. Mol Plant 2008 1: 720-731; doi:10.1093/mp/ssn022. Advance Access published on August 5, 2008. ·
Zhang Q, Li J, Xue Y, Han B and Deng XW. Rice 2020: A Call For An International Coordinated Effort In Rice Functional Genomics. Mol Plant 2008 1: 715-719; doi:10.1093/mp/ssn043. Advance Access published on August 13, 2008. ·
Saijo Y, Zhu D, Li J, Rubio V, Zhou Z, Shen Y, Hoecker U, Wang H, and Deng XW. Mol. Cell 2008 Aug 22;31:607-613. ·
Zhang Y, Feng S, Chen F, Chen H, Wang J, McCall C, Xiong Y, Deng XW. Plant Cell. 2008 Jun 13. [Epub ahead of print] ·
Guo L, Zhou J, Elling AA, Charron JB, Deng XW. Plant Physiol. 2008 Jun 11. [Epub ahead of print] ·
Liu Y, Wang F, Zhang H, He H, Ma L, Deng XW. Plant J. 2008 May 14. [Epub ahead of print] ·
Jang S, Marchal V, Panigrahi KC, Wenkel S, Soppe W, Deng XW, Valverde F, Coupland G. EMBO J. 2008 Apr 23;27(8):1277-88. Epub 2008 Apr 3. ·
Li L, He H, Zhang J, Wang X, Bai S, Stolc V, Tongprasit W, Young ND, Yu O, Deng XW. Genome Biol. 2008 Mar 19;9(3):R57. [Epub ahead of print] ·
Chen H, Zhang J, Neff MM, Hong SW, Zhang H, Deng XW, Xiong L. Proc Natl Acad Sci U S A 2008 Mar 18;105(11):4495-500. Epub 2008 Mar 10. ·
Li X, Wang X, He K, Ma Y, Su N, He H, Stolc V, Tongprasit W, Jin W, Jiang J, Terzaghi W, Li S & Deng XW Plant Cell 2008; Epub Feb 8. 2008. ·
Lee JH, Terzaghi W, Gusmaroli G, Charron JB, Yoon HJ, Chen H, He YJ, Xiong Y & Deng XW Plant Cell 2008; Jan;20:152-67. Epub 2008 Jan 25. ·
Menon S, Tsuge T, Dohmae N, Takio K, Wei N. BMC Biochem 2008 Jan 3;9:1. ·
Feng S, Martinez C, Gusmaroli G, Wang Y, Zhou J, Wang F, Chen L, Yu L, Iglesias-Pedraz JM, Kircher S, Schafer E, Fu X, Fan LM & Deng XW. Coordinated regulation of Arabidopsis thaliana development by light and gibberellins. Nature 2008 Jan 24; 451(475-479).
·
Alabadi D, Gallego-Bartolome J, Orlando L, Garcia-Carcel L, Rubio V, Martinez C, Frigerio M, Iglesias-Pedraz JM, Espinosa A, Deng XW, Blazquez MA. Plant J 2008 Jan;53(2):324-35. Epub 2007 Dec 5. ·
Gong W, He K, Covington M, Dinesh-Kumar SP., Snyder M, Harmer SL, Zhu YX & Deng XW. Molecular Plant 2007 Oct23; [Epub ahead of print]. ·
Rubio V and Deng XW. Standing on the Shoulders
of GIGANTEA Science 2007 Oct 12; 318(5848): 206 - 207. ·
Menon S, Chi H, Zhang H, Deng XW, Flavell RA, Wei N. Nat Immunol. 2007 Nov; 8(11):1236-45. Epub 2007 Sep 30. Supplementary information ·
Han B, Xue Y, Li J, Deng XW, Zhang Q. Rice functional genomics research in China. Philos Trans R Soc Lond B Biol Sci. 2007 Jun 29;362(1482):1009-21. ·
Pick E, Lau OS, Tsuge T, Menon S, Tong Y, Dohmae N, Plafker SM, Deng XW, Wei N. Mol Cell Biol. 2007 Jul;27(13):4708-19. Epub 2007 Apr 23. ·
Qin G, Gu H, Ma L, Peng Y, Deng XW, Chen Z, Qu LJ. Cell Res. 2007 (17): 471-482. Epub 2007 May 8. ·
Li L, Wang X, Sasidharan R., Stolc V, Deng W, He H, Korbel J, Chen X, Tongprasit W, Ronald P, Chen R, Gerstein M, Deng XW. Global Identification and Characterization of Transcriptionally Active Regions in the Rice Genome PLoS ONE. 2007; 2(3): e294. ·
Jiao Y, Deng XW. A genome-wide transcriptional activity survey of rice transposable element-related genes Genome Biology. 2007 8(2):R28. Epub 2007 Feb 27. ·
Lee J, He K, Stolc V, Lee H, Figueroa P, Gao Y, Tongprasit W, Zhao H, Lee I, Deng XW. Plant Cell. 2007 Mar; 19: 731-749. Epub 2007 Mar 2. Editorial Comment ·
Jiao Y, Lau OS, Deng XW. Light-regulated transcriptional networks in higher plants. Nat Rev Genet. 2007 Mar;8(3):217-30. ·
Gusmaroli G, Figueroa P, Serino G, Deng XW. Plant Cell. 19(2):564-81. Epub 2007 Feb 16. ·
Zhou J, Wang X, Jiao Y, Qin Y, Liu X, He K, Chen C, Ma L, Wang J, Xiong L, Zhang Q, Fan L, Deng XW. Plant Mol Biol. 2007 Mar;63(5):591-608. Epub 2007 Jan 16. ·
Zhang, Y, Wen, P, Lau, OS, Deng XW. Characterization of the Ubiquitin E2 Enzyme
Variant Gene Family in Arabidopsis JIPB 2007 Jan;49(1):120-126. ·
Bai S, Zhong X, Ma L, Zheng W, Fan LM, Wei N, Deng XW. Plant J. 2007 Jan; 49 (2): 354-366. Epub 2006 Dec 6. ·
Chen H, Karplus VJ, Ma H, Deng XW. Plant Biology Research Comes of Age in China. Plant Cell. 2006 Nov;18(11):2855-64. ·
Su N, He K, Jiao Y, Chen C, Zhou J, Li L, Bai S, Li X, Deng XW. Plant Mol Biol. 2006 Oct 28; [Epub ahead of print] ·
Wang X, He H, Li L, Chen R, Deng XW, Li S NMPP: a user-customized NimbleGen microarray data processing pipeline. Bioinformatics. 2006 Dec; 22(23): 2955-7. Epub 2006 Oct 12. ·
Lee JH, Deng XW, Kim WT Possible role of light in the maintenance of EIN3/EIL1 stability in Arabidopsis seedlings. Biochem Biophys Res Commun. 2006 Nov; 350(2): 484-491. Epub 2006 Sep 25. ·
Chen, H, Shen Y, Tang X, Yu L, Wang J, Guo L, Zhang Y, Zhang H, Feng S, Strickland E, Zheng N, and Deng XW Plant Cell 2006;18(8):1991-2004. Epub 2006 July 14. ·
Guo L, Yin B, Zhou J, Li X, Deng XW Cell Research. 2006 May; 16(5): 519-27. Epub 2006 May 15 ·
Dong L, Wang L, Zhang Y, Zhang Y, Deng X, Xue Y. Plant Mol Biol. 2006 Mar; 60(4): 599-615. ·
Yi C, Li S, Wang J, Wei N, Deng XW. Int J Biochem Cell Biol. 2006; 38(7): 1076-83. Epub 2006 Feb 8. ·
Li J, Zhu S, Song X, Shen
Y, Chen H, Yu J, Yi K, Liu Y, Karplus VJ, Wu P, Deng
XW. Plant
Cell. 2006 Feb; 18(2):340-9. Epub 2005 Dec 23. ·
Li L, Wang X, Stolc V, Li X, Zhang D, Su
N, Tongprasit W, Li S, Cheng Z, Wang J, Deng XW. Genome-wide
transcription analyses in rice using tiling microarrays. Nature
Genetics. 2006 Jan; 38: 124 – 129. Epub Dec 20. ·
Datta S, Hettiarachchi GH, Deng XW, Holm M. Arabidopsis
CONSTANS-LIKE3 Is a Positive Regulator of Red Light Signaling and Root Growth. Plant
Cell. 2006 Jan;18(1):70-84. Epub 2005 Dec 9. ·
Jiao Y, Ma L, Strickland E, Deng XW. Plant Cell.
Author Profile
Comment
Preview by C. Robertson McClung
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Commentary and Author Profile
Commentary and Author Profile
Suppl. Dataset 1,
2.
Suppl. Dataset 1a,
1b,
2.
·
Kraft E, Stone SL, Ma L, Su N, Gao Y, Lau OS, Deng XW, Callis J.
Plant Physiol. 2005 Dec; 139(4):1597-611.
·
Feng JX,
Liu D, Pan Y, Gong W, Ma LG, Luo JC, Deng XW, Zhu YX.
Plant Mol Biol. 2005 Dec; 59(6):853-68.
· Wang X, Li L, Chen C, Wang J, Li S, and Deng XW
Analysis of oligo hybridization properties by high-resolution tiling arrays in rice.
Proceeding report, 5th International Rice Genetics Symposium, 2005: 65-76. 19-23 November, 2005; Manila, Philippines.
·
Shen Y, Feng S, Ma L, Lin R, Qu LJ, Chen Z, Wang H, Deng XW.
Arabidopsis FHY1
Protein Stability Is Regulated by Light via Phytochrome A and 26S Proteasome.
Plant Physiol. 2005 Nov; 139:
1234–1243.
·
Zhang S, Chen C, Li L, Meng L, Singh J, Jiang N, Deng XW, He ZH, Lemaux
PG.
Plant Physiol. 2005 139(3):1107-24.
·
Stolc V, Li L, Wang X, Li X,
Su N, Tongprasit W, Han B, Xue
Y, Li J, Snyder1 M, Gerstein M, Wang J, Deng XW.
A pilot study of transcription
unit analysis in rice using oligonucleotide tiling-path microarray.
Plant
Molecular Biology. 2005 Sep; 59(1):137–149.
·
Yi C, Deng XW.
COP1 - from plant photomorphogenesis to mammalian tumorigenesis.
Trends Cell Biol. 2005
Nov; 15 (11): 618-625.
·
Ma L, Chen C, Liu X，Jiao Y, Su N, Li L, Wang X, Cao M, Sun N,
Zhang X, Bao J, Li J, Pedersen S, Bolund
L, Zhao H, Yuan L, Wong GKS, Wang J, Deng XW, Wang J.
A microarray analysis of
the rice transcriptome and its comparison to Arabidopsis.
Genome
Research. 2005
September; 15(9):1274-1283.
·
Yi C, Li S, Chen X, Wiemer EAC, Wang J, Wei N, Deng XW.
Cancer Res. 2005 July; 65(13): 5835 – 5840.
·
Menon S, Rubio V, Wang X, Deng XW, Wei N.
Methods Enzymol 2005; 398:468-481.
·
Li L, Deng XW.
It
runs in the family: regulation of brassinosteroid signaling by the BZR1-BES1
class of transcription factors.
Trends Plant Sci. 2005 Jun; 10(6): 266-8.
·
Li L, Wang X, Xia M, Stolc V, Su N, Peng Z, Li S, Wang J, Wang X, Deng XW.
Tiling
microarray analysis of rice chromosome 10 to identify the transcriptome and
relate its expression to chromosomal architecture.
Genome Biol. 2005 Jun ;6(6):R52. Epub 2005 May 27.
·
Jiao Y, Jia P, Wang X, Su N, Yu S, Zhang D, Ma
L, Feng Q, Jin Z, Li L, Xue
Y, Cheng Z, Zhao H, Han B, Deng XW.
A
Tiling Microarray Expression Analysis of Rice Chromosome 4 Suggests a
Chromosome-Level Regulation of Transcription.
Plant Cell. 2005 June; 17(6):1641-57. Epub
2005 Apr 29.
·
Ma L, Sun N, Liu X, Jiao Y, Zhao H, Deng XW.
Organ-Specific
Expression of Arabidopsis Genome during Development.
Plant Physiol. 2005 May;138(1):80-91.
·
Sang Y, Li QH, Rubio V,
Zhang YC, Mao J, Deng XW, Yang HQ.
N-Terminal
Domain-Mediated Homodimerization Is Required for Photoreceptor Activity of
Arabidopsis CRYPTOCHROME 1.
Plant Cell. 2005 May;17(5):1569-84. Epub 2005 Apr 1.
·
Figueroa P, Gusmaroli G, Serino G, Habashi J, Ma L, Shen Y, Feng S, Bostick M, Callis J, Hellmann H, Deng XW.
Arabidopsis
Has Two Redundant Cullin3 Proteins That Are Essential for Embryo Development
and That Interact with RBX1 and BTB Proteins to Form Multisubunit E3 Ubiquitin
Ligase Complexes in Vivo.
Plant Cell. 2005 Apr;17(4):1180-95. Epub 2005 Mar 16.
·
Yang J, Lin R, Sullivan J, Hoecker U, Liu B, Xu L, Deng XW,
Wang H.
Light
Regulates COP1-Mediated Degradation of HFR1, a Transcription Factor Essential
for Light Signaling in Arabidopsis.
Plant Cell. 2005 Mar;17(3):804-21. Epub 2005 Feb 10.
·
Su N, Sullivan J, Deng XW
Modulation
of F1 hybrid stature without altering parent plants through trans-activated
expression of a mutated rice GAI homologue
Plant Biotechnology Journal. 2005 March,3(2):157.
·
Rubio V, Shen
Y, Saijo Y, Liu Y, Gusmaroli
G, Dinesh-Kumar SP, Deng XW.
An
alternative tandem affinity purification strategy applied to Arabidopsis
protein complex isolation
The Plant Journal. 2005 March;41(5):767.
·
Rubio V, Deng XW
Phytunes:
phosphorylation status and phytochrome-mediated signaling.
Cell. 2005 Feb 11;120(3):290-2.
· Li L, Wang X, Li X, Su N, Stolc V, Han B, Li J, Xue Y, Wang J, Deng XW.
In Rice Is Life:
Scientific Perspectives For The 21st Century, eds. K. Toriyama, KL Heong and B Hardy,
2005: 80-83. Proceedings of the World Rice Research Conference held in
·
Wang L, Dong L, Zhang Y,
Zhang Y, Wu W, Deng XW, Xue Y.
Genome-wide
analysis of S-Locus F-box-like genes in Arabidopsis thaliana
Plant Mol Biol. 2004 Dec; 56(6):929-945.
·
Boccalandro HE, Rossi MC, Saijo Y, Deng XW, Casal JJ.
Promotion
of photomorphogenesis by COP1.
Plant Mol Biol. 2004 Dec;56(6):905-15. Epub 2005 Apr 7.
·
Gusmaroli G, Feng S, Deng XW
The Arabidopsis CSN5A and CSN5B Subunits Are Present in
Distinct COP9 Signalosome Complexes, and Mutations in Their JAMM Domains
Exhibit Differential Dominant Negative Effects on Development.
Plant Cell. 2004 Nov;16(11):2984-3001. Epub 2004 Oct 14.
·
Yanagawa Y, Sullivan JA, Komatsu S, Gusmaroli G,
Suzuki G, Yin J, Ishibashi T, Saijo
Y, Rubio V, Kimura S, Wang J, Deng XW.
Arabidopsis
COP10 forms a complex with DDB1 and DET1 in vivo and enhances the activity of
ubiquitin conjugating enzymes
Genes Dev. 2004 Sep;18: 2172-2181.
·
Feng S, Shen Y, Sullivan JA, Rubio V, Xiong Y, Sun TP, Deng XW.
Arabidopsis
CAND1, an unmodified CUL1-interacting protein, is involved in multiple developmental
pathways controlled by ubiquitin/proteasome-mediated protein Degradation.
Plant Cell. 2004 Jul;16(7):1870-82. Epub 2004 Jun 18.
·
Gong W, Shen
YP, Ma LG, Pan Y, Du YL, Wang DH, Yang JY, Hu LD, Liu XF, Dong CX, Ma L, Chen YH, Yang XY, Gao Y, Zhu D, Tan X, Mu JY, Zhang
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the COP9 signalosome Csn2 subunit in mice causes deficient cell proliferation,
accumulation of p53 and cyclin E, and early embryonic deat
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seed to seed: the role of photoreceptors in Arabidopsis development
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Phosphate
starvation triggers distinct alterations of genome expression in Arabidopsis
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Peng Z, Shen Y, Feng
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Curr Biol. 2003 Jul 1;13(13):R504-5.
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Ubiquitin Ligase-Mediated Processes Require COP9 Signalosome and AXR1 Function
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Ligeng Ma, Ying Gao, Lijia
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Plant Cell 2002;14:2383-2398.
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downstream regulatory components, COP1 and HY5, in Arabidopsis.
Plant J. 2002 Sep;31(6):741-53.
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Fry RC, Habashi J, Okamoto
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of a Strong Dominant phytochrome A Mutation Unique to Phytochrome A Signal
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Plant Physiol. 2002 Sep;130(1):457-65.
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Liu Y, Schiff M, Serino G,
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Plant Cell. 2002 Jul;14(7):1483-96.
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Christian S. Hardtke, Haruko
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Biochemical
evidence for ubiquitin ligase activity of the Arabidopsis COP1 interacting
protein 8 (CIP8).
Plant J. 2002 May;30(4):385-94.
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Magnus Holm, Li-Geng Ma,
Li-Jia Qu and Xing-Wang Deng
Two
interacting bZIP proteins are direct targets of COP1-mediated control of
light-dependent gene expression in Arabidopsis.
Genes Dev. 2002 May 15;16(10):1247-1259.
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Wang H, Deng XW.
Arabidopsis
FHY3 defines a key phytochrome A signaling component directly interacting with
its homologous partner FAR1.
EMBO J. 2002 Mar 15;21(6):1339-49.
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Xiaoming Yang,Suchithra
Menon, Karin Lykke-Andersen, Tomohiko Tsuge, Di Xiao, Xiping Wang, Roberto J.
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Arabidopsis
COP10 is a ubiquitin-conjugating enzyme variant that acts together with COP1
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Wang X, Kang D, Feng S,
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Mol Biol Cell 2002 Feb;13(2):646-55.
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Plant Cell 2001 Dec;13(12):2589-607.
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Zhaohua Peng, Giovanna
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Molecular
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multifaceted developmental processes in Arabidopsis.
Plant Cell 2001 Nov;13(11):2393-407.
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Zhaohua Peng, Giovanna
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role of Arabidopsis COP9 signalosome in multifaceted developmental processes
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Wang H, Ma LG, Li JM, Zhao
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Science 2001 Oct 5;294(5540):154-8.
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Does
EID1 Aid the Fine-Tuning of Phytochrome A Signal Transduction in Arabidopsis?
Plant Cell. 2001 Sep;13(9):1983-1986.
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RESEARCH HOT PAPERS--Comments about this paper from The Scientist.
Fabruary 16 2004; 28-29
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Yamamoto N.
Molecular
cloning of a novel importin alpha homologue from rice, by which constitutive
photomorphogenic 1 (COP1) nuclear localization signal (NLS)-protein is
preferentially nuclear imported.
J Biol Chem. 2001 Mar 23;276(12):9322-9.
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M.
Cip4,
a new cop1 target, is a nucleus-localized positive regulator of arabidopsis
photomorphogenesis.
Plant Cell. 2001 Feb;13(2):399-411.
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Holm M, Hardtke CS, Gaudet
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Identification
of a structural motif that confers specific interaction with the WD40 repeat
domain of Arabidopsis COP1.
EMBO J. 2001 Jan 15;20(1 & 2):118-127.
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Peng Z, Staub JM, Serino G,
Kwok SF, Kurepa J, Bruce BD, Vierstra RD, Wei N, Deng XW.
The
Cellular Level of PR500, a Protein Complex Related to the 19S Regulatory
Particle of the Proteasome, Is Regulated in Response to Stresses in Plants.
Mol Biol Cell. 2001 Feb;12(2):383-392.
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Tsuge T, Matsui M, Wei N
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subunit 1 of the COP9 signalosome suppresses gene expression through its
N-terminal domain and incorporates into the complex through the PCI domain.
J Mol Biol. 2001 Jan 5;305(1):1-9.
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COP/DET/FUS proteins-regulators of eukaryotic growth and development.
Semin Cell Dev Biol. 2000 Dec;11(6):495-503.
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The
cell biology of the COP/DET/FUS proteins. Regulating proteolysis in
photomorphogenesis and beyond?
Plant Physiol. 2000 Dec;124(4):1548-57.
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XW.
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roles of photoreceptor systems and the COP1-targeted destabilization of HY5 in
light control of arabidopsis seedling development
Plant Physiol. 2000 Dec;124(4):1520-4.
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Kang D, Wang X, Cao K, Sun
C, Deng XW, Wei N.
A
gain-of-function phenotype conferred by over-expression of functional subunits
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Plant J. 2000 Sep;23(5):597-608.
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Hardtke CS, Gohda K, Osterlund MT, Oyama T, Okada K, Deng XW.
HY5
stability and activity in Arabidopsis is regulated by phosphorylation in its
COP1 binding domain.
EMBO J. 2000 Sep 15;19(18):4997-5006.
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Hsieh HL, Okamoto H, Wang M,
Ang LH, Matsui M, Goodman H, Deng XW.
FIN219,
an auxin-regulated gene, defines a link between phytochrome A and the
downstream regulator COP1 in light control of arabidopsis development.
Genes Dev. 2000 Aug 1;14(15):1958-70.
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Deng XW, Dubiel W, Wei N, Hofmann K, Mundt K.
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nomenclature for the COP9 signalosome and its subunits: an essential regulator
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Trends Genet. 2000 Jul;16(7):289.
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Osterlund MT, Hardtke CS,
Wei N, Deng XW.
Targeted
destabilization of HY5 during light-regulated development of Arabidopsis
Nature 2000 May;405:462-466.
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Deng XW, Dubiel W, Wei N, Hofmann K, Mundt K, Colicelli J, Kato
Jy, Naumann M, Segal D, Seeger M, Glickman M, Chamovitz DA, Carr A.
Unified
nomenclature for the COP9 signalosome and its subunits: an essential regulator
of development.
Trends Genet. 2000 May;16(5):202-3.
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Yamamoto YY, Puente P, Deng
XW.
An
Arabidopsis cotyledon-specific albino locus: a possible role in 16S rRNA maturation.
Plant Cell Physiol 2000; 41(1): 68-76.
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Stoop-Myer C, Torii KU,
McNellis TW, Coleman JE, Deng XW.
Short
Communication: The N-terminal fragment of Arabidopsis photomorphogenic
repressor COP1 maintains partial function and acts in a concentration-dependent
manner.
Plant J 1999 Dec;20(6):713-717.
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Holm M, Deng XW.
Structural
organization and interactions of COP1, a light-regulated developmental switch.
Plant Mol Biol 1999 Sep;41(2):151-8.
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Yamamoto N, Deng XW.
Protein
nucleocytoplasmic transport and its light regulation in plants.
Genes Cells. 1999 Sep;4(9):489-500.
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Serino G, Tsuge T, Kwok S,
Matsui M, Wei N, Deng XW.
Arabidopsis
cop8 and fus4 mutations define the same gene that encodes subunit 4 of the COP9
signalosome.
Plant Cell 1999 Oct;11(10):1967-80.
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Torii KU, Stoop-Myer CD,
Okamoto H, Coleman JE, Matsui M, Deng XW.
The
RING finger motif of photomorphogenic repressor COP1 specifically interacts
with the RING-H2 motif of a novel Arabidopsis protein.
J Biol Chem. 1999 Sep 24;274(39):27674-81.
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Wang H, Kang D, Deng XW, Wei
N.
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Curr Biol. 1999 Jul 1;9(13):711-4.
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Deng XW, Quail PH.
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Semin Cell Dev Biol. 1999 Apr;10(2):121-9.
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Wei N, Deng XW.
Making
sense of the COP9 signalosome, a conserved regulatory protein complex from
Arabidopsis to human
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XW.
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molecular and cellular basis of COP1 as a repressor of photomorphogenetic
development in Arabidopsis
Trends Cell Biol. 1999 Mar;9(3):113-8.
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Kwok SF, Staub JM, Deng XW.
Characterization
of two subunits of Arabidopsis 19S proteasome regulatory complex and its
possible interaction with the COP9 complex.
J Mol Biol. 1999 Jan 8;285(1):85-95.
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Yamamoto YY, Deng XW.
A new vector set for GAL4-dependent transactivation
assay in plants
Plant Biotech.1998;15(4):217-220.
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Yamamoto YY, Matsui M, Deng
XW.
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plant signaling pathways
Trends Plant Sci. 1998;(3): 374-375.
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von Arnim AG, Deng XW,
Stacey MG.
Cloning
vectors for the expression of green fluorescent protein fusion proteins in
transgenic plants.
Gene. 1998 Oct 9;221(1):35-43.
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Karniol B, Yahalom A, Kwok
S, Tsuge T, Matsui M, Deng XW, Chamovitz DA.
The
Arabidopsis homologue of an eIF3 complex subunit associates with the COP9
complex.
FEBS Lett. 1998 Nov 13;439(1-2):173-9.
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Multiple
photoreceptors mediate the light-induced reduction of GUS-COP1 from Arabidopsis
hypocotyl nuclei.
Plant J. 1998 Oct;16(2):201-8.
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Chamovitz DA, Deng XW.
Molecular approaches to biochemical purification:
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Kwok SF, Solano R, Tsuge T,
Chamovitz DA, Ecker JR, Matsui M, Deng XW.
Arabidopsis
homologs of a c-Jun coactivator are present both in monomeric form and in the
COP9 complex, and their abundance is differentially affected by the pleiotropic
cop/det/fus mutations.
Plant Cell 1998 Nov;10(11):1779-90.
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Torii KU, McNellis TW, Deng
XW.
Functional
dissection of Arabidopsis COP1 reveals specific roles of its three structural
modules in light control of seedling development.
EMBO J. 1998 Oct 1;17(19):5577-87.
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Chattopadhyay S, Puente P,
Deng XW, Wei N.
Combinatorial
interaction of light-responsive elements plays a critical role in determining
the response characteristics of light-regulated promoters in Arabidopsis.
Plant J. 1998 Jul;15(1):69-77.
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Wei N, Deng XW.
Characterization
and purification of the mammalian COP9 complex, a conserved nuclear regulator
initially identified as a repressor of photomorphogenesis in higher plants.
Photochem Photobiol. 1998 Aug;68(2):237-41.
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Wei N, Tsuge T, Serino G,
Dohmae N, Takio K, Matsui M, Deng XW.
The
COP9 complex is conserved between plants and mammals and is related to the 26S
proteasome regulatory complex.
Curr Biol. 1998;8(16):919-22.
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Yamamoto YY, Matsui M, Ang
LH, Deng XW.
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of a COP1 interactive protein in mediating light-regulated gene expression in
arabidopsis.
Plant Cell 1998 Jul;10(7):1083-94.
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Deng XW.
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SEB symposium 51 (1998): Control
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Ang LH, Chattopadhyay S, Wei
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Molecular
interaction between COP1 and HY5 defines a regulatory switch for light control
of Arabidopsis development.
Mol Cell 1998 Jan;1(2):213-22.
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Chattopadhyay S, Ang LH,
Puente P, Deng XW, Wei N.
Arabidopsis
bZIP protein HY5 directly interacts with light-responsive promoters in
mediating light control of gene expression.
Plant Cell 1998 May;10(5):673-83.
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von Arnim AG, Osterlund MT,
Kwok SF, Deng XW.
Genetic
and developmental control of nuclear accumulation of COP1, a repressor of photomorphogenesis
in Arabidopsis.
Plant Physiol. 1997 Jul;114(3):779-88.
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Torii KU, Deng XW.
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in light control of Arabidopsis seedling development
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Chamovitz DA, Deng XW.
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Plant, Cell Environment 1997 (20):734-9.
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Chamovitz DA, Deng XW.
Light signaling in plants. Critical reviews
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Kwok SF, Deng XW.
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Staub JM, Deng XW.
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signal transduction in plants.
Photochem Photobiol 1996 Dec;64(6):897-905.
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Staub JM, Wei N, Deng XW.
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for FUS6 as a component of the nuclear-localized COP9 complex in Arabidopsis.
Plant Cell 1996 Nov;8(11):2047-56.
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von Arnim A, Deng XW.
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role for transcriptional repression during light control of plant development.
Bioessays 1996 Nov;18(11):905-10.
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role of the COP/DET/FUS genes in light control of arabidopsis seedling
development.
Plant Physiol. 1996 Nov;112(3):871-8.
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McNellis TW, Torii KU, Deng
XW.
Expression
of an N-terminal fragment of COP1 confers a dominant-negative effect on
light-regulated seedling development in Arabidopsis.
Plant Cell 1996 Sep;8(9):1491-503.
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Puente P, Wei N, Deng XW.
Combinatorial
interplay of promoter elements constitutes the minimal determinants for light
and developmental control of gene expression in Arabidopsis.
EMBO J. 1996 Jul 15;15(14):3732-43.
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Chamovitz DA, Wei N, Osterlund
MT, von Arnim AG, Staub JM, Matsui M, Deng XW.
The
COP9 complex, a novel multisubunit nuclear regulator involved in light control
of a plant developmental switch.
Cell 1996 Jul 12;86(1):115-21.
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Kwok SF, Piekos B, Misera S,
Deng XW.
A
complement of ten essential and pleiotropic arabidopsis COP/DET/FUS
genes is necessary for repression of photomorphogenesis in darkness.
Plant Physiol 1996 Mar;110(3):731-42.
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McNellis TW, Deng XW.
Light
control of seedling morphogenetic pattern.
Plant Cell 1995 Nov;7(11):1749-61.
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Chamovitz DA, Deng XW.
The
novel components of the Arabidopsis light signaling pathway may define a group
of general developmental regulators shared by both animal and plant kingdoms.
Cell 1995 Aug 11;82(3):353-4.
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Matsui M, Stoop CD, von
Arnim AG, Wei N, Deng XW.
Arabidopsis
COP1 protein specifically interacts in vitro with a cytoskeleton-associated
protein, CIP1.
Proc Natl Acad Sci
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von Arnim AG, Deng XW.
Light
inactivation of Arabidopsis photomorphogenic repressor COP1 involves a
cell-specific regulation of its nucleocytoplasmic partitioning.
Cell 1994 Dec 16;79(6):1035-45.
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McNellis TW, von Arnim AG,
Deng XW.
Overexpression
of Arabidopsis COP1 results in partial suppression of light-mediated
development: evidence for a light-inactivable repressor of photomorphogenesis.
Plant Cell 1994 Oct;6(10):1391-400.
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Wei N, Chamovitz DA, Deng
XW.
Arabidopsis
COP9 is a component of a novel signaling complex mediating light control of
development.
Cell 1994 Jul 15;78(1):117-24.
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Wei N, Kwok SF, von Arnim
AG, Lee A, McNellis TW, Piekos B, Deng XW.
Arabidopsis
COP8, COP10, and COP11 genes are involved in repression of photomorphogenic
development in darkness.
Plant Cell 1994 May;6(5):629-43.
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Ang LH, Deng XW.
Regulatory
hierarchy of photomorphogenic loci: allele-specific and light-dependent
interaction between the HY5 and COP1 loci.
Plant Cell 1994 May;6(5):613-28
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McNellis TW, von Arnim AG,
Araki T, Komeda Y, Misera S, Deng XW.
Genetic
and molecular analysis of an allelic series of cop1 mutants suggests functional
roles for the multiple protein domains.
Plant Cell 1994 Apr;6(4):487-500.
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Deng XW
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view of light signal transduction in plants.
Cell 1994 Feb 11;76(3):423-6.
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von Arnim AG, Deng XW.
Ring
finger motif of Arabidopsis thaliana COP1 defines a new class of zinc-binding
domain.
J Biol Chem. 1993 Sep 15;268(26):19626-31
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Wei N, Deng XW.
COP9:
a new genetic locus involved in light-regulated development and gene expression
in arabidopsis.
Plant Cell 1992 Dec;4(12):1507-18.
·
Deng XW, Matsui M, Wei N,
Wagner D,
COP1,
an Arabidopsis regulatory gene, encodes a protein with both a zinc-binding
motif and a G beta homologous domain.
Cell 1992 Nov 27;71(5):791-801.
·
Bruce WB, Deng XW, Quail PH.
A
negatively acting DNA sequence element mediates phytochrome-directed repression
of phyA gene transcription.
EMBO J. 1991 Oct;10(10):3015-24.
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Deng XW, Caspar T, Quail PH.
cop1:
a regulatory locus involved in light-controlled development and gene expression
in Arabidopsis.
Genes Dev. 1991 Jul;5(7):1172-82.