1999 

CACCONE, A., G. Amato, O.C. Gratry, J. Behler, J.R. Powell.  A molecular phylogeny of four endangered Madagascar tortoises based on mtDNA sequences. Molecular Phylogenetics and Evolution, 12: 1-9

Allegrucci, G., A. CACCONE, V. Sbordoni. Cytochrome b sequence divergence in the European Sea Bass (Dicentrarchus labrax) and phylogenetic relationships among some Perciformes species. J. of Zool. Syst. and Evol. Res., 37: 149-156

CACCONE, A., J.P. Gibbs, V. Ketmaier, El. Suatoni, J.R. Powell. Origin and evolutionary relationships of giant Gálapagos tortoises. Proceedings National Academy of Sciences (PNAS) USA, 96: 13223-13228

Powell, J.R., A. CACCONE, V. Petrarca, A. della Torre, and M. Coluzzi.  Population structure, speciation, and introgression in the Anopheles gambiae complex.  Parassitologia, 41: 101-113

1998

CACCONE, A., Gi-Sik Min, J.R. Powell.  Multiple origins of cytologically identical chromosome inversions in the Anopheles gambiae  complex.Genetics, 150: 807-814

CACCONE, A., B.A. García, K. D. Mathioupoulos, Gi-Sik Min, E. N. Moriyama, J.R. Powell.  Characterization of the soluble guanylyl cyclase  b-subunit gene in Anopheles gambiae and evidence of Pegasus-27  transposable element insertion.  Insect Molecular Biology, 8(1): 23-30

1997   

CACCONE, A., M. Milinkovitch, V. Sbordoni, and J.R. Powell.  Phylogeny, biogeography, and molecular rates in European newts  (genera Euproctus and Triturus), inferred from mitochondrial DNA  sequences. Systematic Biology, 46(10): 126-144

Gleason, J.H., A. CACCONE, E.N. Moriyama, K.P. White, J.R. Powell. Mitochondrial DNA phylogenies in the Drosophila obscura  group.Evolution, 51(2): 433-440 

CACCONE, A., G. Allegrucci, C. Fortunato, V. Sbordoni. Genetic differentiation within the European sea bass (Dicentrarchus labrax) as revealed by RAPD-PCR assays. Journal of Heredity, 88(4): 316-324

1996        

CACCONE, A., B.A. García, and J.R. Powell.  Evolution of the  mitochondrial DNA control region in the Anopheles gambiae  complex. Journal of Insect Molecular Biology, 5: 51-59

García, B.A., A. CACCONE, K. Mathiopoulos, and J.R. Powell. Inversion monophyly in African malaria  vectors. Genetics 143: 1313-1320

CACCONE, A., E.N. Moriyama, J.M. Gleason, L. Nigro, and J.R. Powell. A  molecular Phylogeny or the Drosophila melanogaster  subgroup. Molecular Biology and Evolution 13: 1224-1232

1995        

Allegrucci, G., A. CACCONE, S. Cataudella, J.R. Powell, and V. Sbordoni. Acclimation of the European sea bass to freshwater:  Monitoring genetic changes by RAPD polymerase chain  reaction to detect DNA polymorphisms. Marine Biology 121: 591-599

1994       

CACCONE, A., M.C. Milinkovitch, V. Sbordoni, and J.R. Powell.  Molecular biogeography: Calibrating mitochondrial rDNA evolutionary rates in mountain newts (Euproctus) using the Corsica-Sardinia  microplate disjunction. Journal of Evolutionary Biology 7: 227-245         

Besansky, N.J., J.R. Powell, A. CACCONE, D.M. Hamm, J.M. Scott, and F.H. Collins.  Molecular phylogeny of the Anopheles gambiae complex suggests genetic introgression between principal malaria vectors.  Proceedings National Academy of Sciences  (PNAS) USA, 91: 6885-6888

1993       

Powell, J.R., A. CACCONE, J.M. Gleason, and L. Nigro. Rates of DNA evolution  in Drosophila depend on function and developmental stage of expression. Genetics, 133: 291-298

1992    

CACCONE, A., J.M. Gleason, and J.R. Powell.  Complementary DNA-DNA hybridization in Drosophila. J. of  Mol. Evol., 34: 130-140

Sbordoni, V., F. Baldari, and A. CACCONE. Tempi relativi e assoluti dell’evoluzione. Contributi Centro Linceo Interdisciplinare B. Segre, Accademia Nazionale dei Lincei, 85: 197-244

1991         

Powell, J.R., and A. CACCONE. DNA-DNA hybridization:  principles and results. In: G. M. Hewitt (ed) Molecular techniques in taxonomy, NATO ASI Series. Springer, Berlin Heidelberg New York. pp. 117-130    

CACCONE, A. Man and molecular phylogeny.  Bollettino di Zoologia, 58: 379-384
  
Allegrucci, G., A. CACCONE, D. Cesaroni, and V. Sbordoni. Evolutionary divergence in European cave crickets: a comparison of scDNA data with allozymic and morphometric  distances. Journal of Evolutionary  Biology,  5: 121-148

1990     

Sbrdoni, V., A. CACCONE, G. Allegrucci, and D. Cesaroni. Molecular Island Biogeography, p.55-83. In: A. Azzaroli (ed.), " Biogeographical aspects of insularity". Atti dei  Convegni Lincei, vol. 85, Accademia Nazionale dei Lincei, Roma, Italy, 841pp. 

Goddard, K.A., A. CACCONE, and J.R. Powell. Evolutionary implications of DNA divergence in the Drosophila obscura group.  Evolution, 44: 1656-1670    
            
CACCONE, A., and J.R. Powell. Extreme rates and heterogeneity in  Insects DNA evolution. J. of Mol. Evol., 30: 273-280  

Powell, J.R., and A. CACCONE. The TEACL method of DNA-DNA hybridization: Technical Considerations. J. of  Mol. Evol., 30: 267-272

CACCONE, A., and J.R. Powell. A protocol for the TEACL method of DNA-DNA hybridization. In: GM Hewitt (ed) Molecular techniques in taxonomy, NATO ASI Series. Springer, Berlin Heidelberg New York. pp. 385-407  

1989        

CACCONE, A., and J.R. Powell. DNA divergence among hominoids. Evolution, 43 (5):925-942   

Powell, J.R., and A. CACCONE. Intra- and interspecific genetic variation in Drosophila. Genome, 31: 233-238   

1988 

CACCONE, A., R. DeSalle and J.R. Powell. Calibration of the change in  thermal  stability of DNA duplexes and degree of  base-pair mismatch.  J. of Mol. Evol., 27: 212-216 

CACCONE, A., G.D. Amato and J.R. Powell. Rates and patterns of scnDNA and mtDNA divergence within the Drosophila  melanogaster subgroup. Genetics, 118: 671-683   

1987      

CACCONE, A., G.D. Amato and J.R. Powell. Intraspecific DNA divergence in Drosophila: a study on parthenogenetic D.  mercatorum. Molecular Biology and  Evolution, 4: 343-350   

CACCONE, A. and V. Sbordoni. Molecular evolutionary divergence among North American cave crickets. I. Allozyme  variation.  Evolution, 41: 1198-1214    

CACCONE, A. and J.R. Powell. Molecular evolutionary divergence among North American cave crickets. II. DNA-DNA  hybridization.  Evolution,  41: 1215-1238 

Sbordoni, V., G. Allegrucci, A. CACCONE, G. Carchini and D. Cesaroni. Microevolutionary studies. In Dolichopodinae cave crickets, pp. 514-540. In "Evolutionary Biology of  Orthopteroid Insects", B. Baccetti ed., Horwood Ltd. Publ.,  Chichester, UK.

1986     

CACCONE, A., G. Allegrucci, D. Cesaroni, M. Cobolli, E. De Matthaeis, G. La Rosa, V. Sbordoni. Genetic variability and divergence between cave dwelling populations of Typhlocirolana from Majorca and Sicily.       Biochemical Systematics and Ecology, 14: 215-221

CACCONE, A. Molecular studies of evolutionary divergence within and among North American cave crickets. Phylosophical Doctorate Thesis. Yale University (USA). Abstract. 

Powell, J.R., A. CACCONE, G.D. Amato and C. Yoon. Rates of nucleotide substitutions in Drosophila mitochondrial DNA and  nuclear DNA are similar. Proceedings National Academy of Sciences USA (PNAS), 83: 9090-9093

1985        

CACCONE, A. Gene flow in cave organisms: a qualitative and quantitative approach. Evolution, 39: 1223-123

1983        

De Matthaeis, E., G. Allegrucci, A. CACCONE, D. Cesaroni, M. Cobolli. Genetic differentiation between Penaeus kerathurus and P. japonicus  (Crustacea, Decapoda). Marine Ecology Progress Series, 12: 191-197 

Allegrucci, G., A. CACCONE, D. Cesaroni, M. Cobolli, E. De Matthaeise,V. Sbordoni. Ibridazione naturale e sperimentale tra specie di Dolichopoda (Orthoptera). Atti XII Congr. Naz. Ital. Entomol., Roma, vol. I: 225-230

De Matthaeis, E., M. Cobolli, M. Mattoccia, G. Allegrucci, A. CACCONE, D. Cesaroni, M. Rampini e V.Sbordoni. Struttura genetica di popolazioni  cavernicole di Bathysciola derosasi (Coleoptera, Catopidae): bottleneck e divergenza genetica. Atti XII Congr. Naz. Ital. Entomol. Roma, vol. II: 253-254
    
Cesaroni, D., V. Sbordoni, G. Allegrucci, A. CACCONE, M. Cobolli, E. De Matthaeis. Analisi multivariata dei dati sul differenziamento genetico tra popolazioni e specie di Dolichopoda Orthoptera, Raphidophoridae) dell'Italia centro-meridionale. Atti XII Congr. Naz. Entomol. Roma, vol. II: 231-234

1982     

Allegrucci, G., A. CACCONE, D. Cesaroni, M. Cobolli, E. De Matthaeis, V. Sbordoni. Natural and experimental interspecific hybridization between populations of Dolichopoda cave crickets. Experientia, 38: 96-98  

CACCONE, A., M. Cobolli, E. De Matthaeis, V. Sbordoni. Una datazione su base genetico molecolare della divergenza tra specie cavernicole e marine di Sferomidi (gen. Monolistra  e Sphaeroma,  Crustacea, Isopoda). Lavori Società Italiana di  Biogeografia (n.s.) 7: 853-867 

1981     

Sbordoni, V., G. Allegrucci, A. CACCONE, D. Cesaroni, M. Cobolli, E. De Matthaeis. Genetic variability and divergence in cave populations of Troglophilus cavicola and T. andreinii (Orthoptera, Raphidophoridae).  Evolution, 35(1): 226-233  

Cesaroni, D., G. Allegrucci, A. CACCONE, M. Cobolli, E. De Matthaeis, M. Di Rao. Genetic variability and divergence between population and species of Nesticus cave spiders.  Genetica, 56: 81-92   

Cobolli, M., G. Allegrucci, A. CACCONE, D. Cesaroni, E. De Matthaeis, V. Sbordoni. Variabilita' genetica in popolazioni cavernicole del genere Troglophilus  (Orth. Rhaph.): influenza di fattori stocastici e deterministici. In: "Ecologia", SITE, Atti 1: 269-272   

De Matthaeis, E., M. Cobolli, A. CACCONE, G. Allegrucci, D. Cesaroni, V. Sbordoni. Diversitá genetica e flusso genico in ragni  cavernicoli del genere Nesticus. In:  "Ecologia", SITE, Atti 1: 275-279  

1980     

Sbordoni, V., A. CACCONE, E. De Matthaeis, M. Cobolli. Biochemical divergence between cavernicolous and marine Sphaeromidae and  the Mediterranean salinity crisis. Experientia, 36: 48-49

Sbordoni, V., G. Allegrucci, A. CACCONE, D. Cesaroni, M. Cobolli, E. De Matthaeis. A preliminary report of the genetic variability levels in troglobitic Bathysciinae: Leptodirus hohenwarti and two Orostygia species (Coleoptera, Catopidae). Fragmenta Entomologica, 15: 327- 336

1978      

Sbordoni, V., A. CACCONE, E. De Matthaeis, M. Cobolli. Una datazione su base genetico-molecolare della divergenza tra specie cavernicole di Monolistra  (Isopoda, Sphaeromidae). In "Biogeografia delle caverne italiane".  XXII Congresso Nazionale Societá Italiana di  Biogeografia, Verona ITALY: 91-94