Aptamers and Allosteric Ribozyme Publications

Publication Type	Title	Reference	Links
Aptamers and Allosteric Ribozymes
Primary	Engineered allosteric ribozymes that respond to specific divalent metal ions	Zivarts M, Liu Y, Breaker RR (2005) Nucleic Acids Res. Jan 28;33(2):622-31.	PubMed
Primary	Selection in vitro of allosteric ribozymes	Roth A, Breaker RR (2004) Methods Mol Biol. 252:145-64	PubMed
Review	Engineered allosteric ribozymes as biosensor components	R.R. Breaker (2002) Curr. Opin. Biotechnol. 13:31-39	PubMed
Primary	Cooperative binding of effectors by an allosteric ribozyme	A.M. Jose, G.A. Soukup and R.R. Breaker (2001) Nucleic Acids Res. 29:1631-1637	PubMed
Primary	Immobilized RNA switches for the analysis of complex chemical and biological mixtures	S. Seetharaman, M. Zivarts, N. Sudarsan and R.R. Breaker (2001) Nature Biotechnol. 19:336-341	PubMed
Primary	Generating new ligand-binding RNAs by affinity maturation and disintegration of allosteric ribozymes	G.A. Soukup, E.C. DeRose, M. Koizumi and R.R. Breaker (2001) RNA 7:524-536	PubMed
Primary	Molecular recognition of cAMP by an RNA aptamer	M. Koizumi and R.R. Breaker (2000) Biochemistry 39:8983-8992	PubMed
Review	Allosteric nucleic acid catalysts	G.A. Soukup and R.R. Breaker (2000) Curr. Opin. Struct. Biol. 10:318-325	PubMed
Primary	Altering the ligand specificity of aptamers using allosteric selection	G.A. Soukup, G.A.M. Emilsson and R.R. Breaker (2000) J. Mol. Bio. 298:623-632	PubMed
Review	Allosteric ribozymes	G.A. Soukup and R.R. Breaker (2000) In: Ribozymes: Biochemistry and Biotechnology. G. Krupp and R.K. Gaur eds. Eaton Publishing
Primary	Allosteric ribozymes sensitive to the second messengers cAMP and cGMP	M. Koizumi, J.K. Kerr, G.A. Soukup and R.R. Breaker (1999) Nature Struct. Biol. 6:1062-1071	PubMed
Review	Engineering nucleic acid enzymes	G.A. Soukup, A. Roth and R.R. Breaker (1999) In: Improving Enzyme Catalysis. Marcel Dekker, Inc. New York, NY (in press)
Review	Nucleic acid molecular switches	G.A. Soukup and R.R. Breaker (1999) Trends Biotechnol. 17:469-476	PubMed
Primary	Engineering precision RNA molecular switches	G.A. Soukup and R.R. Breaker (1999) Proc. Natl. Acad. Sci. USA 96:3584-3589	PubMed
Primary	Design of allosteric hammerhead ribozymes activated by ligand-induced structure stabilization	G.A. Soukup and R.R. Breaker (1999) Structure 7:783-791	PubMed
Primary	Mechanism of allosteric inhibition of an ATP-sensitive ribozyme	J. Tang and R.R. Breaker (1998) Nucleic Acids Res. 26:4222-4229	PubMed
Primary	Rational design of allosteric ribozymes	J. Tang and R.R. Breaker (1997) Chem. & Biol. 4:453-459	PubMed
Review	Inventing and improving ribozyme function: rational design versus iterative selection methods	R.R. Breaker and G.F. Joyce (1994) Tibtech. 12:268-275	PubMed

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