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known natural enzymes are made of protein or RNA. In contrast, DNA
is almost exclusively used by cells to store genetic information,
and has never been found to serve as an enzyme in modern organisms.
This has led many researchers to believe that DNA must be catalytically
inert.
The first report of a deoxyribozyme or catalytic
DNA, created by in vitro evolution from random sequences,
showed that single-stranded DNA molecules are indeed capable of
greatly accelerating chemical transformations in a substrate. Since
this initial report, researchers in the Breaker lab have explored
deoxyribozyme-mediated catalysis of other chemical reactions including
the reactions necessary for DNA cloning, DNA-catalyzed RNA cleavage
using other cofactors such as histidine, and DNA catalysis in complex
reaction mixtures.
DNA is capable of catalyzing a variety of chemical
reactions either with the assistance of bound cofactors or entirely
from the chemical diversity present in the chemical composition
of DNA itself. In addition, several structures of DNA aptamers have
been solved that show that DNA is adept at forming binding pockets
for small molecules. Although, no structures of active deoxyribozymes
have been solved, current findings suggest that single-stranded
DNA is capable of forming intricate structures that exhibit robust
and diverse catalytic function.
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The study of catalytic DNA can
greatly contributed to our understanding of enzymatic catalysis
and biopolymer function in general. In addition, catalytic DNA is
a compelling platform for the practical development of useful biotech
tools. DNA demonstrates the features of molecular recognition, adaptive
binding, catalytic function, and dynamic rearrangement that will
allow studies of deoxyribozymes to complement and expand known principles
of enzyme function and utility.

RNA-Cleaving DNAs
Amino Acid Utilizing Deoxyribozymes
Phosphorylating DNA with DNA
Capping DNA with DNA
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